Education

06.2004 — Ph.D. (C.Sc.) in Mathematics and Physics («Theoretical Foundations of Informatics»)
Institution: St. Petersburg State University
Thesis title: Polynomial Algorithms for Solving Combinatorial Problems on Arrangements of Rectangles
Advisors: I.V. Romanovsky and V.V. Bukhvalova

06.2000 — M.Sc. in Mathematics
Institution: Peter the Great St. Petersburg Polytechnic University

06.1998 — B.Sc. in Mathematics
Institution: Peter the Great St. Petersburg Polytechnic University

Scientific interests

Bioinformatics, computational geometry.

Selected publications

1. K. Vyatkina, L.J.M. Dekker, S. Wu, M.M. VanDuijn, X. Liu, N. Tolić, T.M. Luider and L. Paša-Tolić. De novo sequencing of peptides from high-resolution bottom-up tandem mass spectra using top-down intended methods. Proteomics 17:23–24, 2017.
2. K. Vyatkina, S. Wu, L.J.M. Dekker, M.M. VanDuijn, X. Liu, N. Tolić, T.M. Luider, L. Paša-Tolić and P.A. Pevzner. Top-down analysis of protein samples by de novo sequencing techniques. Bioinformatics 32:18, 2753–2759, 2016.
3. K. Vyatkina, S. Wu, L.J.M. Dekker, M.M. VanDuijn, X. Liu, M. Dvorkin, S. Alexandrova, N. Tolić, T.M. Luider, L. Paša-Tolić and P.A. Pevzner. De novo sequencing of peptides from top-down tandem mass spectra. Journal of Proteome Research 14:11, 4450–4462, 2015.
4. X. Liu, L. Dekker, S. Wu, M. Vanduijn, T. Luider, N. Tolic, Q. Kou, M. Dvorkin, S. Alexandrova, K. Vyatkina, L. Pasa-Tolic and P. A. Pevzner. De novo protein sequencing by combining top-down and bottom-up tandem mass spectra. Journal of Proteome Research 13:7, 3241–3248, 2014.
5. G. Barequet, M.T. Dickerson, D. Eppstein, D. Hodorkovsky and K. Vyatkina. On 2-site Voronoi diagrams under geometric distance functions. Journal of Computer Science and Technology 28:2, 167–177, 2013.

Additional Information

See my publication lists on Web of Science, Scopus, Google Scholar.

Teaching